Homology(Sequence Similarity) Search at NCC
Currently available service
FastA - Sequence Similarity Searching
- fasta/tfasta : nucleotide/protein query - nucleotide database search
- fasta : protein query - protein database search
- lfasta : comparison of two nucleotide/protein sequences
BLAST - Basic Local Alignment Search Tool
- blastn/tblastn : nucleotide/protein query - nucleotide database search
- blastp/blastx : nucleotide/protein query - protein database search
MPsrch - Smith and Waterman Homology Search on MP-2216(MasPar)
- nn/nna : nucleotide query - nucleotide database search
- pp/ppa : protein query - protein database search
- ntp/ntpa : nucleotide query - protein database (bktranslated) search
- tpn/tpna : protein (bktranlated) query - nucleotide database search
Currently available databases
- Nucleic Acid Databases.
- DDBJ regular release (Rel.26,Jul.1996)
- GenBank regular release (Rel.97,Oct.1996)
- EMBL regular release (Rel.48,Sep.1996)
- Protein Databases.
- Swiss-Prot regular release (Rel.33,Feb.1996)
- PIR regular release (Rel.49,Jul.1996)
If you have any question about these services, please mail to
www-admin@dec7000.ncc.go.jp